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josef pasulka - data analysis with HTS
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josef pasulka

data analysis with HTS
Academy of Sciences of the Czech Republic • Institute of Molecular Genetics • Prague • Czech Republic

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • scRNA-seq analysis
  • Gene expression microarray analysis
Languages
  • English
Programming languages
  • R

Favorites and Collections

Favorites

BitSeq
Desktop
DESeq
Desktop
Salmon
Desktop

Collections

No collections...

Fields of interest

RNA-seq analysis
Discovers large indels using optical maps (OM) reads with weak signal. OMIndel…
Identifies genetic variants that overlap with genes coding for lincRNA or miRNA…
Deduces gene regulations by exploiting time-series gene expression data.…
scRNA-seq analysis
Reconstructs the B cell receptor (BCR) sequence. BRAPes takes advantage of the…
Visualizes balances of compositional data using an alternative to the balance…
Detects differentially expressed genes (DEGs) between tumor and normal samples.…
Gene expression microarray analysis
Assists users for visualizing ancestry data. AncestryView first proceeds by…
Provides a pattern recognition for cell-free DNA (cfDNA). CfdnaPattern is an…
Permits users to accelerate the construction of coexpression networks on modern…