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Pedro Ballester - Researching, one day at a time
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Pedro Ballester

Researching, one day at a time
French Institute of Health and Medical Research • Paris • France

http://crcm.marseille.inserm.fr/en/researchteams/pedro-ballester/

Skills and expertise

Fields of interest
  • Drug design
  • RNA-seq analysis
  • Protein interaction analysis
Languages
  • English
  • French
  • Spanish
Programming languages
  • C
  • Python
  • R
  • Shell (Bash)

TOOLS MAINTAINED

RF-Score-VS

Desktop

RF-Score-VS

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Provides general purpose and target independent Virtual Screening (VS) tools. RF-Score-VS is a Random Forest-based scoring function which predicts binding affinity. Its descriptors are based on…

RF-Score

Desktop

RF-Score

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Introduces a substantial improvement over classical scoring functions. RF-Score is a machine-learning scoring function that was constructed in an entirely data-driven manner by circumventing the need…

CCLP

Web

CCLP / Cancer Cell Line Profiler

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Provides a collection of publicly available machine learning models to predict patterns of growth inhibition with estimated confidence using conformal prediction. Prediction models have been…

USR-VS

Web

USR-VS

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A USRbased webserver for large-scale prospective virtual screening. USR-VS performs large-scale ligand-based Virtual Screening (VS), which is oriented to the prospective validation of the obtained…

Fields of interest

Drug design
Performs de novo prediction of structural properties of proteins. rawMSA leans…
Consists of a data platform with associated analytical workflow. ERNIE is a…
Designs proteins in a computational manner. iCFN can be employed for several…
RNA-seq analysis
Rectifies errors in long-read sequences. FMLRC employs the FM-index to…
Identifies genotypic loci and covariates with effects on phenotypic variance.…
Serves for the identification of differential expression genes by providing an…
Protein interaction analysis
Assists users to estimate concentration dependent plasma binding capacity of…
Discovers different patterns of protein-protein interactions (PPIs) in…
Aligns phenotypic abnormality defining human phenotype ontology (HPO) terms…