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Fabien Pichon - Bioinformatician
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Fabien Pichon

Bioinformatician
OmicX • Rouen • France

PhD ès Neurosciences, I worked 8 years on the brain and its diseases. I then specialized in bioinformatics (NGS, epigenetics) and worked in CEA and GENETHON before to join OMICX and help OMICtools community.

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • ChIP-seq analysis
  • BS-seq analysis
Languages
  • English
  • French
  • Spanish
Programming languages
  • Java
  • PHP
  • Python

Favorites and Collections

Favorites

SAMtools
Desktop
MACS
Desktop
HOMER
Desktop
Bowtie
Desktop
Trimmomatic
Desktop
TopHat
Desktop
DESeq
Desktop
HomeoSplitter
Desktop

Reviews and Discussions

LATEST REVIEWS

PFMS 2015-12-24, 12:45:02
Usefull if you want to run several peak callers on the same samples without loosing your time ! You can then only use consensus peaks to win specificity, but is it really necessary to run several…
ASCAT 2015-12-24, 12:37:38
For CNV identification. Works well. The paper is very clear, very well explained ! A lot of usefull plots. Sometimes, it cannot resolve the couple (ploidy, aberrent fraction cell) shown in the…

LATEST DISCUSSIONS

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Work experience

CTO
omicX - Rouen
October 2016 - Today
Bioinformatician
CEA (CNG) - Paris area
March 2016 - September 2016
Bioinformatician
GENETHON - Paris area
March 2015 - February 2016
Bioinformatician
CEA (CNG) - Paris area
October 2013 - February 2015

Bioinformatics projects

Education

Master STIC for health
University of Montpellier II
2012 - 2013
PhD in Neurosciences
University of Lausanne
2002 - 2008

Fields of interest

RNA-seq analysis
Deduces target gene expression profiles using a conditional generative model.…
Changes nucleotide sequences into interactive browser-based two-dimensional…
Performs secure analyses and visualization of users’ private functional…
ChIP-seq analysis
Performs σ54 recognition. S54Finder was developed to work with short DNA…
Allows the identification of differential chromatin domains (DCDs) from…
Deduces target gene expression profiles using a conditional generative model.…
BS-seq analysis
Integrates both phenotypic measurements and genetic variants as features for…
Annotates and filtrates variant files. VarAFT allows the comparison of several…
Predicts de novo profile generation based on sequence context. SPBuild…