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pmk601313 - Bioinformatics
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pmk601313

Bioinformatics
National University • Manila • Philippines

Skills and expertise

Fields of interest
  • Genome edition
  • WGS analysis
  • De novo sequencing analysis
Languages
  • English
Programming languages
  • Java

Fields of interest

Genome edition
Predicts model for single guide RNA (sgRNA) on-target knockout efficacy and…
Constructs optimal gRNAs for the CRISPR-Cpf1 system. CRISPR-DT can take into…
Processes batch analysis of CRISPR edits using Sanger data. ICE can quantify…
WGS analysis
Conducts RNA-seq read alignment and read counting from raw sequence reads to…
Introduces user-defined haplotype-phased allele-specific copy number events…
Provides a read alignment software for whole genome sequencing (WGS). CS-BWAMEM…
De novo sequencing analysis
Serves to ChIP-seq Wig data. Wig is a standard file format, which in this…
Reduces the number of misassemblies in a genome sequence assembly. Tigmint uses…
Constructs and publishes websites for synteny block analyses by exploiting…