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rana hooshang

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University of Tehran • Tehran • Iran

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • BS-seq analysis
Languages
  • English

Fields of interest

WGS analysis
Simulates targeted capture sequencing data. CapSim simulates the dynamics of…
Classifies true and false variants. GARFIELD-NGS can be applied in single…
Builds maps for two genotype datasets: barley and potato from diploid and…
De novo sequencing analysis
Studies sequence similarities. SSAW is based on the stationary wavelet…
Allows users to preserve the inter-position dependencies and includes the…
Identifies, classifies and annotates transposable elements (TEs) of non-model…
BS-seq analysis
Provides a deep neural network base caller for nanopore sequencing. Chiron…
Calculates average amino-acid identity (AAI) between a query proteome and all…
Implements an indexing data structure for compacted de Bruijn graph (dBG) and…