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Rodrigo Bacigalupe - Scientist
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Rodrigo Bacigalupe

University of Antwerp • Flanders Institute for Biotechnology • Gent • Belgium

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
  • English
  • Spanish
Programming languages
  • Python
  • R
  • Shell (Bash)

Fields of interest

WGS analysis
Performs somatic variant calling. DeepSomatic consists of a convolutional…
Generates a population of 3D genome structures where each domain is represented…
Allows users to quantify and visualize gradients of genetic variation with the…
RNA-seq analysis
Identifies genes with alteration bias. FABRIC is an open source application…
Identifies differentiation pathways in single-cell transcriptome data. GraphDDP…
Offers a platform for DNA-protein aligning. AC-DIAMOND intends to furnish a…
Metagenomic sequencing analysis
Identifies microbial pathogens from metagenomic next-generation sequencing…
Creates strain design strategies using metabolite analogues (Mas). MARSI is…
Allows generation and evaluation of phylogenetic trees. UBCG is based on the…