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Ryan Spengler - Postdoc
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Ryan Spengler

Postdoc
University of Michigan–Ann Arbor • Ann Arbor • United States of America

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • ChIP-seq analysis
  • scRNA-seq analysis
Languages
  • English
Programming languages
  • R
  • Shell (Bash)

Fields of interest

RNA-seq analysis
Deduces alternative polyadenylation (APA) from conventional RNA-seq data. QAPA…
An indexing scheme to support sequence-based querying of terabyte-scale…
Maps ethyl methanesulfonate (EMS)-induced mutations in forward genetic screens…
ChIP-seq analysis
Allows long read alignment to large reference genomes by splitting the index…
Simplifies the execution of existing short read aligners (SRA) on…
Predicts gene regulatory regions from genome sequences. DeepGMAP supplies a…
scRNA-seq analysis
Allows users to handle sequencing data with unique molecular identifiers…
Assists users in evaluating methods, particularly some data-driven methods or…
Provides a method for the simultaneous isolation of genomic DNA and total RNA…