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Samed SAKA - Researcher
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Samed SAKA

Genkok • Turkey

Computer Engineer | MSc Student in Bioinformatics

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
  • English
Programming languages
  • C++
  • Python
  • R

Fields of interest

WGS analysis
Assists users in extracting DNA sequences around genetic variants. SeqTailor is…
Estimates telomere length from cancer whole genome sequencing (WGS) data.…
Classifies protein sequence and identifies remote protein homology via…
De novo sequencing analysis
Estimates species trees given a set of rooted gene trees. DynaDup is based on…
Investigates mutation count data to assess the signatures of mutational…
Allows users to perform reconstruction of phylogenetic trees and ancestral…
Metagenomic sequencing analysis
Offers a platform to visualize multiple datasets, focusing on low biomass…
Assists users in reading TIGER-rate file or other rate files. RatePartitions…
Allows users to optimize a scoring function for pairwise-profile alignment…