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samuel collombet

Institute Curie • Paris • France

Skills and expertise

Fields of interest
  • WGS analysis
  • BS-seq analysis
  • Protein interaction analysis
  • English
  • French
  • Spanish
Programming languages
  • Python
  • R
  • Shell (Bash)

Fields of interest

WGS analysis
Allows users to infer population structure. POPSTR is a Bayesian integrative…
Trains a decision tree from single nucleotide polymorphism database (dbSNP) and…
Allows to compress DNA sequences, quality scores and read identifiers. FaStore…
BS-seq analysis
Performs common tasks in metagenomic data analysis from raw read quality…
An indexing scheme to support sequence-based querying of terabyte-scale…
Permits researchers to conduct investigation and construct high-quality…
Protein interaction analysis
Predicts RNA protein interaction via extreme gradient boosting classifier named…
Predicts potential microbe-disease associations using a graph-regularized…
Predicts human microbe-disease associations. NCPHMDA is a non-parametric and…