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sandip kale - Research Scientist
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sandip kale

Research Scientist
IPK • Hyderabad • India

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Gene expression array analysis
Languages
  • English
Programming languages
  • Perl

Fields of interest

WGS analysis
Desktop
MAGNAMWAR
Enables bacterial genome-wide association (BGWA) to predict bacterial genes…
Desktop
SVEngine
Constructs short sequence read sets for thousands of spike-in variants that…
Desktop
ShRangeSim
Provides a simulation tool of single nucleotide polymorphism (SNP) clusters for…
RNA-seq analysis
Desktop
FMLRC
Rectifies errors in long-read sequences. FMLRC employs the FM-index to…
Desktop
FaStore
Allows to compress DNA sequences, quality scores and read identifiers. FaStore…
Desktop
SpaRC
Enables large-scale metagenome and transcriptome reads clustering. SpaRC is an…
Gene expression array analysis
Algorithm
Shrinkage Clustering
Identifies optimal number of clusters while partitioning data. Shrinkage…
Algorithm
TriVote
Allows detection of a subset of transcriptomic or methylomic residues. TriVote…
Desktop
NepomucenoEtAl2018
Consists of an algorithm that integrates biological information to search…

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