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Pubudu Saneth - Scientific programming, Exome/Whole-Genome sequence analysis, Chromatin 3D structure analysis
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Pubudu Saneth

Scientific programming, Exome/Whole-Genome sequence analysis, Chromatin 3D structure analysis
Oslo University Hospital • Oslo • Norway

I love to solve hard problems...

Skills and expertise

Fields of interest
  • Synthetic biology
  • WGS analysis
  • WES analysis
Languages
  • English
Programming languages
  • Python
  • R
  • Shell (Bash)

Fields of interest

Synthetic biology
Allows modular assembly of Golden Gate-compatible cloning broad-host range…
Deduces the "lab-of-origin" of DNA sequence datasets. predict-lab-origin is an…
Offers a methodology for understanding how different parameters can affect the…
WGS analysis
Investigates mutation count data to assess the signatures of mutational…
Estimates haplotypes in polyploid parent-offspring trios. TriPoly is an…
Generates clustering trees and provides a visualization feature for…
WES analysis
Allows users to distinguish human and mouse reads in High-Throughput Sequencing…
Serves as a scalable composition tool for implementing asynchronous Boolean…
Allows users to conduct large-scale comparisons of their results with thousands…