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Sangram keshari sahu - Junior Research Fellow
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Open to new opportunities

Sangram keshari sahu

Junior Research Fellow
IISER MOHALI

M.Sc Bioinformatics from Pondicherry University. Currently working as a JRF at Indian Institute of Science Education and Research (IISER) Mohali, with the research focus on Plant Genomics and Systems Biology.

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • scRNA-seq analysis
  • Gene expression microarray analysis
Languages
  • English
Programming languages
  • C
  • C++
  • MATLAB
  • Perl
  • PHP
  • Python
  • R

Favorites and Collections

Favorites

SAMtools
Desktop
MACS
Desktop
SICER
Desktop
Web
HOMER
Desktop
Bowtie
Desktop
BWA
Desktop
IGV
Desktop
ArrayExpress
Dataset
GEO
Dataset
FastQC
Desktop
Trimmomatic
Desktop
Bio-Linux
Desktop
Galaxy
Web
BEDTools
Desktop
STAR
Desktop
TopHat
Desktop
Cufflinks
Desktop
DESeq
Desktop
edgeR
Desktop
Trinity
Desktop
MISO
Desktop
Tuxedo
Desktop
Ensembl
Dataset
GenBank
Dataset
RefSeq
Dataset
COGs
Dataset
DAVID
Web
GSEA
Desktop
TCGA Data Portal
Dataset
VENNY
Web
HTSeq
Desktop
CPC
Web
Desktop
HISAT
Desktop
StringTie
Desktop
deepTools
Desktop
Web
CNCI
Desktop
Seurat
Desktop
Ballgown
Desktop
MultiQC
Desktop
Chimera
Desktop
RNA workbench
Server
GATK
Desktop
NCBI
Dataset
PLncPRO
Desktop
gplots
Desktop

Reviews and Discussions

LATEST REVIEWS

PLncDB 2018-10-11, 18:55:48
This site is no more reachable. I have tried several time in the past, contacted the author also. Doesn't seems like resolved yet.
FastQC 2018-10-05, 12:49:52
One of the oldest and basic tools for NGS data quality check. Every sequencing project needs this tool to determine various aspects of the sequencing output results in each step of the analysis. I…

LATEST DISCUSSIONS

No discussions...


Work experience

Junior Research Fellow
Indian Institute of Science Education and Research Mohali - Mohali
May 2017 - Today

Education

M.Sc. Bioinformatics
Pondicherry University
2015 - 2017

Fields of interest

RNA-seq analysis
Identifies protein-lncRNA interactions. PLIPCOM is constructed from three…
Discovers large indels using optical maps (OM) reads with weak signal. OMIndel…
Identifies genetic variants that overlap with genes coding for lincRNA or miRNA…
scRNA-seq analysis
Enables interrogation of multiple single-cell (scRNA-Seq) datasets. scMerge is…
Offers an imputation technique for single cell RNAseq (scRNAseq) data. deepMC…
Enables researchers to assign a cell type to each cell in an experiment. CaSTLe…
Gene expression microarray analysis
Assists users for visualizing ancestry data. AncestryView first proceeds by…
Provides a pattern recognition for cell-free DNA (cfDNA). CfdnaPattern is an…
Permits users to accelerate the construction of coexpression networks on modern…