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Sangram keshari sahu - Computational Biology and Bioinformatics
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Open to new opportunities

Sangram keshari sahu

Computational Biology and Bioinformatics
Indian Institute of Science Education and Research Mohali • Mohali • India

A bioinformatics graduate. Junior Research Fellow at IISER Mohali doing a project in Computational Biology.

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • Metagenomic sequencing analysis
  • scRNA-seq analysis
Languages
  • English
Programming languages
  • C
  • C++
  • MATLAB
  • Perl
  • PHP
  • Python
  • R

Favorites and Collections

Favorites

SAMtools
Desktop
MACS
Desktop
SICER
Desktop
Web
HOMER
Desktop
Bowtie
Desktop
BWA
Desktop
IGV
Desktop
ArrayExpress
Dataset
GEO
Dataset
FastQC
Desktop
Trimmomatic
Desktop
BEDTools
Desktop
STAR
Desktop
TopHat
Desktop
Cufflinks
Desktop
DESeq
Desktop
edgeR
Desktop
Trinity
Desktop
MISO
Desktop
Tuxedo
Desktop
Ensembl
Dataset
GenBank
Dataset
RefSeq
Dataset
COGs
Dataset
DAVID
Web
GSEA
Desktop
TCGA Data Portal
Dataset
VENNY
Web
HTSeq
Desktop
CPC
Web
Desktop
HISAT
Desktop
StringTie
Desktop
deepTools
Desktop
Web
CNCI
Desktop
Seurat
Desktop
Ballgown
Desktop
MultiQC
Desktop
Chimera
Desktop
RNA workbench
Server
GATK
Desktop
NCBI
Dataset
PLncPRO
Desktop
gplots
Desktop

Work experience

Junior Research Fellow
Indian Institute of Science Education and Research Mohali - Mohali
May 2017 - Today

Education

M.Sc. Bioinformatics
Pondicherry University
2015 - 2017

Fields of interest

RNA-seq analysis
Allows users to handle sequencing data with unique molecular identifiers…
Serves for Illumina short read sequencing data. PriLive allows users to remove…
Identifies potential long non-coding RNAs (lncRNA)-disease associations. TPGLDA…
Metagenomic sequencing analysis
Gathers DNA sequences via clustering. STARS uses K-means algorithm and GSP…
Rectifies errors in long-read sequences. FMLRC employs the FM-index to…
Calculates anchor points for genome alignment. Spaced Anchor is a pipeline that…
scRNA-seq analysis
Incorporates tools and workflows for the analysis of environmental DNA (eDNA)…
Performs secure analyses and visualization of users’ private functional…
Removes the biases inherent in raw Unique Molecular Identifier (UMI) counts and…