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senaj - Bioinformatics Research Associate and NGS Sequencing Lab . Coordinator
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Open to new opportunities

senaj

Bioinformatics Research Associate and NGS Sequencing Lab . Coordinator
National Center for Genome Resources • Santa Fe • United States of America

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • Python

Favorites and Collections

Favorites

ShortStack
Desktop
STAR
Desktop
Subread
Desktop
DESeq
Desktop
edgeR
Desktop
SPAdes
Desktop
MEGAN
Desktop
HISAT
Desktop
poretools
Desktop
SeqCluster
Desktop
CLARK
Desktop
DIAMOND
Desktop
SAMSA
Desktop
Centrifuge
Desktop
Pavian
Desktop

Collections

No collections...

Reviews and Discussions

LATEST REVIEWS

poretools 2017-11-07, 05:11:26
Poretools is relatively easy to use those with command-line experience. This software produces easy to understand summary plots of MinION data. The output is more intuitive that the output from…
MEGAN 2017-11-07, 05:03:55
Works well with DIAMOND for metatranscriptomic data analysis.

LATEST DISCUSSIONS

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Fields of interest

WGS analysis
Enables linkage disequilibrium (LD) decay analysis. PopLDdecay allows…
Discovers the mean in a partition distribution. mean_partition is based on an…
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
RNA-seq analysis
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
Assists users for annotating transcriptome and functional analysis of…
Enables exploration and classification of large collections of gene clusters.…
Metagenomic sequencing analysis
Enables the discovery, ranking, and clustering of colinear syntenic blocks…
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
Clarifies detailed evolutionary relationships between gene clusters. CORASON…