Unlock your biological data

?
senaj's avatar image
senaj - Bioinformatics Research Associate and NGS Sequencing Lab . Coordinator
Open to new opportunities
senaj's avatar image
Upload a photo
Open to new opportunities

senaj

Bioinformatics Research Associate and NGS Sequencing Lab . Coordinator
National Center for Genome Resources • Santa Fe • United States of America

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • Python

Favorites and Collections

Favorites

ShortStack
Desktop
STAR
Desktop
Subread
Desktop
DESeq
Desktop
edgeR
Desktop
SPAdes
Desktop
MEGAN
Desktop
HISAT
Desktop
poretools
Desktop
SeqCluster
Desktop
CLARK
Desktop
DIAMOND
Desktop
SAMSA
Desktop
Centrifuge
Desktop
Pavian
Desktop

Collections

No collections...

Reviews and Discussions

LATEST REVIEWS

poretools 2017-11-07, 05:11:26
Poretools is relatively easy to use those with command-line experience. This software produces easy to understand summary plots of MinION data. The output is more intuitive that the output from…
MEGAN 2017-11-07, 05:03:55
Works well with DIAMOND for metatranscriptomic data analysis.

LATEST DISCUSSIONS

No discussions...


Fields of interest

WGS analysis
Controls for the disruptive effects of both population structure and…
Prioritizes cancer gene by integrating diverse data types on a directed…
Sifts true de novo mutations (DNMs) from noise. HAPDeNovo drastically…
RNA-seq analysis
Allows generation and evaluation of phylogenetic trees. UBCG is based on the…
Handles repeated sequences for phylogenic inference. GCTree allows users to…
Permits to reconstruct transcriptional regulatory networks. TReNA uses gene…
Metagenomic sequencing analysis
Conducts RNA-seq read alignment and read counting from raw sequence reads to…
Models gene expression data. GEESE aims to solve the problem of the…
Enables users to reconstruct genome-scale metabolic models for any organism…