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Shailesh Kumar - Big data scientist
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Shailesh Kumar

Big data scientist
Ministry of Science and Technology • National Institute of Plant Genome Research • New Delhi • India

Research Interests
Gene fusion detection in Plants

Fusion transcripts (i.e., chimeric RNAs) resulting from gene fusions are well known in case of human. But, in plants, this phenomenon is not yet explored. We are planning to discover the fusion…

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Gene expression array analysis
Languages
  • English

Fields of interest

De novo sequencing analysis
Provides a multi-assembler and multi-kmer protocol. Oyster River Protocol…
Detects partial haplotype matches in a given cohort. fastLS consists of a set…
Annotates and filtrates variant files. VarAFT allows the comparison of several…
RNA-seq analysis
Analyzes RNA-seq count data. dNBFA is built on a Bayesian covariate-dependent…
Permits exome, whole-genome, and targeted sequencing analyses. Mosdepth is a…
Serves for Illumina short read sequencing data. PriLive allows users to remove…
Gene expression array analysis
Allows to detect gene families in transcriptomes under strong selection. FUSTr…
Permits researchers to conduct investigation and construct high-quality…
Serves for processing Infinium DNA methylation data. SeSAMe consists of light…