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shalabh thakur - Bioinformatician
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shalabh thakur

Bioinformatician
University of Calgary • Calgary • Canada

Skills and expertise

Fields of interest
  • WGS analysis
  • Metagenomic sequencing analysis
  • aCGH data analysis
Languages
  • English
Programming languages
  • Perl
  • Python
  • R

Fields of interest

WGS analysis
Performs structural variants (SVs) calling from low coverage long-read…
Aids users to simulate phenotypes and also to evaluate genome-wide association…
Estimates area under the ROC curve (AUC) and its standard error for a polygenic…
Metagenomic sequencing analysis
Allows users to optimize a scoring function for pairwise-profile alignment…
Manages information related with metabolite identification. WebMetabase offers…
Displays the sequence space and calculates locations of sequences of interest.…
aCGH data analysis
Enables spatial mapping of RNA-seq transcript data onto high resolution tissue…
Permits user to work on segmentation of genomic and epigenomic profiles. iSeg…
Analyzes next-generation sequencing (NGS) from experiments using unique…