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Open to new opportunities

shangli cheng

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Karolinska Institute • Stockholm • Sweden

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • MS-based untargeted proteomics
  • MS-based untargeted metabolomics
Languages
  • Chinese
  • English
Programming languages
  • C
  • C++
  • MATLAB
  • Perl
  • Python
  • R

Fields of interest

RNA-seq analysis
Provides a tool to select the band width according to the read’s error rates.…
Classifies biological sequences based on the feature extraction from complex…
Predicts transcriptomic structural variants (TSVs) from RNA-seq data. SQUID is…
MS-based untargeted proteomics
Identifies and quantifies spectral library members within data-independent…
Integrates mass spectrometry (MS) data from the intact protein and glycopeptide…
Identifies cross-linked peptides with maximum paired scores in a protein…
MS-based untargeted metabolomics
Supplies an algorithm for peak deconvolution for linear matrix-assisted laser…
Offers a platform dedicated to metabolite annotation. CEU Mass Mediator gives…
Permits metabolite identification from both unlabeled and stable-isotope…