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山口晴代 - Microbiology
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山口晴代

Microbiology
National Institute for Environmental Studies • Tsukuba • Japan

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • Japanese

Fields of interest

WGS analysis
Finds transpositions given the alignments of second generation reads to a…
Evaluates rare short tandem repeat (STR) expansions from whole genome…
Estimates species trees given a set of rooted gene trees. DynaDup is based on…
RNA-seq analysis
Provides several tools for processing phylogenetic. Gappa can automatically…
Supports the validation of experiments by annotating variants and prioritizing…
Provides a deep neural network base caller for nanopore sequencing. Chiron…
Metagenomic sequencing analysis
Assists user in gene team problem. This algorithm has a time complexity…
Allows k-mer-based analysis of large collections of sequenced samples. Kmer-db…
Calculates anchor points for genome alignment. Spaced Anchor is a pipeline that…