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shi jialong - bioinformatics
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shi jialong

bioinformatics
Fujian Agriculture and Forestry University • Fuzhou • China

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Gene expression array analysis
Languages
  • Chinese
Programming languages
  • Python

Fields of interest

De novo sequencing analysis
Allows users to construct targeted pseudo-contigs generated by assembling reads…
Scaffolds genomes using paired-end RNA-sequencing reads. P_RNA_scaffolder is a…
Predicts promoter in intergenic regions of bacterial genomes. G4PromFinder…
RNA-seq analysis
Enables epigenomic imputation. Avocado is a model that compresses epigenomic…
Integrates predictions of several popular scores (SIFT, Polyphen-2, LRT,…
Analyzes structural variants (SVs) and allele-specific copy numbers of genomic…
Gene expression array analysis
Reproduces Gaussian clusters. Clusterlab is a customizable package, able to…
Allows detection of a subset of transcriptomic or methylomic residues. TriVote…
Provides a neighbor protein structure retrieval method. ContactLib scans…