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shuhan deng

assemble
Novogene Bioinformatics Institute • Beijing • China

Skills and expertise

Fields of interest
  • Synthetic biology
  • WGS analysis
  • De novo sequencing analysis
Languages
  • Chinese
Programming languages
  • Perl

Fields of interest

Synthetic biology
Enables synthetic gene designers to evaluate their own constructs and put codon…
Aims to assemble multiple DNA fragments in a single reaction using a…
Allows to fetch and store parts and designs from Synthetic Biology Open…
WGS analysis
Provides a general framework for Bayesian inference of reticulate evolution.…
Identifies genes with alteration bias. FABRIC is an open source application…
Enables bacterial genome-wide association (BGWA) to predict bacterial genes…
De novo sequencing analysis
An indexing scheme to support sequence-based querying of terabyte-scale…
Permits users to analyze large genomic sequences. QUAST-LG is a module of QUAST…
Allows users to construct targeted pseudo-contigs generated by assembling reads…