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Silvia Bottini - INSERM U1065, C3M University of Nice Sophia-Antipolis, France
Open to new opportunities
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Open to new opportunities

Silvia Bottini

INSERM U1065, C3M University of Nice Sophia-Antipolis, France
French Institute of Health and Medical Research • Paris • France

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • Gene expression array analysis
  • Protein interaction analysis
Languages
  • English
  • French
  • Italian
Programming languages
  • Python
  • R
  • Shell (Bash)

TOOLS MAINTAINED

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PIPE-chipSAD

Desktop

PIPE-chipSAD

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Integrates the analysis of the hybridization signal with the genomic position of probes and identifies portions of the genome transcribing for mRNAs. PIPE-chipSAD is a pipeline for bacterial…

Fields of interest

RNA-seq analysis
Assists users in processing and similarity searching of next-generation…
Performs common tasks in metagenomic data analysis from raw read quality…
Predicts functions of no-knowledge proteins, particularly for those in the…
Gene expression array analysis
Provides a collection of clustering similarity measures for all three…
Performs secure analyses and visualization of users’ private functional…
Allows users to compare genomic structures and annotations across multiple…
Protein interaction analysis
Provides a method for predicting essential proteins. TEO is an algorithm that…
Offers a method for clustering multi-omics data. NEMO is a package requiring…
Finds gene sets with statistically significant changes in functional…