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simon labrie

SyntBioLab • Qu├ębec • Canada

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
  • English
Programming languages
  • Python

Fields of interest

De novo sequencing analysis
Provides a method to study the human genome. CpGTLBO is based on the CpGcluster…
Allows identification and visualization of CRISPR loci. CRISPRviz detects and…
Genotypes normal and expanded tandem repeats (TRs) from next-generation…
RNA-seq analysis
Discovers low-rank biclusters within a large data-matrix. This method can be…
Consists of a genomic context explorer. GeneSpy is a program that aims to…
Provides a de novo assembler. STAble is composed of three modules: (1)…
Metagenomic sequencing analysis
Allows comparison and separation of orthology relationships. CAT uses the…
Allows users to profile viruses and eukaryotes. MICoP is a computational method…
Maps reads against multiple reference genomes. PanVC is designed for variant…