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sourav8888 - NGS data analysis
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Open to new opportunities

sourav8888

NGS data analysis
International Crops Research Institute for the Semi-Arid Tropics • Patancheru • India

Skills and expertise

Fields of interest
  • Genome edition
  • WES analysis
  • RNA-seq analysis
Languages
  • English
Programming languages
  • C
  • Perl
  • PHP
  • R
  • Shell (Bash)

Fields of interest

Genome edition
Constructs optimal gRNAs for the CRISPR-Cpf1 system. CRISPR-DT can take into…
Assesses deep-sequencing data from clustered regularly interspaced short…
Arranges single-nucleotide and amino acid variants genome-wide and measures…
WES analysis
Provides a tool to select the band width according to the read’s error rates.…
Allows users to conduct large-scale comparisons of their results with thousands…
Allows users to optimize a scoring function for pairwise-profile alignment…
RNA-seq analysis
Combines structural variation (SV) calls from different algorithms to reduce…
Allows comparison and separation of orthology relationships. CAT uses the…
Calculates average amino-acid identity (AAI) between a query proteome and all…