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srialle - NGS data analysis
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srialle

NGS data analysis
French National Centre for Scientific Research • Paris • France

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • ChIP-seq analysis
Languages
  • English
  • French
  • Spanish
Programming languages
  • Perl
  • R
  • Shell (Bash)

Fields of interest

WGS analysis
Performs fine-mapping and effect size estimation of genetic causal variants.…
Chooses the best gene vectors as biomarkers/features for the classification of…
Serves for mutation-based clustering of tumors. ccpwModel's binary variables…
RNA-seq analysis
Supplies a protein homology search method alternative to BLAST. TOPAZ is a…
Allows generation and evaluation of phylogenetic trees. UBCG is based on the…
Identifies RNA editing sites based on RNA-seq data in organelles based on…
ChIP-seq analysis
Serves as a fully automatic analysis of protein family conservation within a…
Analyzes the association of gene expression indices with interval times. GAIT…
Allows long read alignment to large reference genomes by splitting the index…