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stephenpollo - Bioinformatics
Open to new opportunities
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Open to new opportunities

stephenpollo

Bioinformatics
University of Calgary • Calgary • Canada

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • Assembly language
  • Java
  • Javascript
  • R
  • Shell (Bash)

Fields of interest

De novo sequencing analysis
Allows to scale genome-wide analysis. Dot2dot is an algorithm for tandem repeat…
Studies sequence similarities. SSAW is based on the stationary wavelet…
Identifies conserved non-coding elements (CNEs) between two given DNA sequences…
RNA-seq analysis
Maps bisulfite-treated short DNA reads to a reference genome. BisPin supports…
Supplies a protein homology search method alternative to BLAST. TOPAZ is a…
Creates disjoint segments of reference transcriptomes amenable for…
Metagenomic sequencing analysis
Determines bacterial plasmid sequences in genomic and metagenomic assemblies.…
Allows users to conduct large-scale comparisons of their results with thousands…
Provides a library written in Nim programming language that suits for simple…