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subash rai - sr RT
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subash rai

sr RT
University of Queensland • Brisbane • Australia

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • Assembly language

Fields of interest

De novo sequencing analysis
Predicts cell-type specificity of a transcription factors (TFs) binding site…
Allows to rank, filter and explore cancer genomics data (genes, cell lines and…
Detects degenerate nucleotide motif matches in FASTA files. Motif Scraper…
RNA-seq analysis
Provides a collection of tools designed to work on the BARM database. BARM…
Builds genome-minimized strains. MinGenome excludes metabolic and regulatory…
Allows users to perform alternative splicing investigations. Matt provides more…
Metagenomic sequencing analysis
Builds profiles of taxonomic and functional metagenomes. NG-meta-profiler…
Allows researchers to directly retrieve the annotation of a hit from the…
Permits users to analyze data from Oxford Nanopore technology (ONT) MinION…