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Susan J. Brown - Professor
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Susan J. Brown

Professor
Kansas State University • Manhattan • United States of America

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • BS-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English

TOOLS MAINTAINED

Irys-scaffolding

Desktop

Irys-scaffolding

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Constructs genome maps and assembles them to super scaffold draft sequence assemblies. Irys-scaffolding preps raw molecule maps, writes and computes a series of assemblies for them. It starts by…
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Fasta-O-Matic

Desktop

Fasta-O-Matic

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Returns a reformatted file if the input file violates the user defined format requirements. Fasta-O-Matic can be employed as a general pre-processing tool in bioinformatics workflows. It consists of…

Fields of interest

De novo sequencing analysis
Compresses genome sequencing data. BdBG dispatches similar reads into the same…
Assists users with key gene identification in immune diseases. Gene Ranke is an…
Enables the discovery, ranking, and clustering of colinear syntenic blocks…
BS-seq analysis
Compresses genome sequencing data. BdBG dispatches similar reads into the same…
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
Integrates both phenotypic measurements and genetic variants as features for…
Metagenomic sequencing analysis
Compresses genome sequencing data. BdBG dispatches similar reads into the same…
Enables the discovery, ranking, and clustering of colinear syntenic blocks…
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…