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taghreed elkasaby - bioinformatics analysis
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taghreed elkasaby

bioinformatics analysis

Skills and expertise

Fields of interest
  • WGS analysis
  • Metagenomic sequencing analysis
  • Gene expression array analysis
Languages
  • English
Programming languages
  • Java

Fields of interest

WGS analysis
Enables computation of kinship from the founder inbreeding coefficients. PedKin…
Evaluates the possible tandem duplication random losses (TDRLs) for a pair of…
Allows users to infer tumor progression which includes mutation losses from…
Metagenomic sequencing analysis
Allows for reproducible, higher-resolution comparisons across studies.…
Consists of an alignment-free functional binning and abundance estimation…
Produces maximum-likelihood phylogenetic trees and their associated distance…
Gene expression array analysis
Handles enrichment heatmaps. EnrichedHeatmap is an R package able to gather…
Permits the construction of tumor-cell specific gene/protein co-expression…
Enables spatial mapping of RNA-seq transcript data onto high resolution tissue…