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vtischler - Physician Scientist
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vtischler

Physician Scientist
University of Cologne • Köln • Germany

Skills and expertise

Fields of interest
  • Genome edition
  • Immune system analysis
  • De novo sequencing analysis
Languages
  • English
Programming languages
  • C++
  • Pascal
  • Python
  • R
  • Julia

Fields of interest

Genome edition
Processes batch analysis of CRISPR edits using Sanger data. ICE can quantify…
Arranges single-nucleotide and amino acid variants genome-wide and measures…
Creates single-guide RNA (sgRNA) for clustered regularly interspaced short…
Immune system analysis
Trains pan-specific human leukocyte antigen (HLA)-peptide binding affinity…
Assembles and serves for visualization of known immune response to a specific…
Provides a model for antibody dependent cellular cytotoxicity (ADCC). ODE model…
De novo sequencing analysis
Predicts AsCpf1 (Cpf1 from Acidaminococcus sp. BV3L6) activity based on target…
Performs automated joint deconvolution and phylogeny inference of tumor genomic…
Estimates species trees given a set of rooted gene trees. DynaDup is based on…