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winningjoe - methylation , cancer
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winningjoe

methylation , cancer

Skills and expertise

Fields of interest
  • WGS analysis
  • BS-seq analysis
  • Metagenomic sequencing analysis
Languages
  • Chinese
  • English
Programming languages
  • MATLAB
  • Perl
  • Python
  • R

Fields of interest

WGS analysis
Performs fine-mapping and effect size estimation of genetic causal variants.…
Consists of a script that constructs a database using the ClinVar XML files.…
Classifies protein sequence and identifies remote protein homology via…
BS-seq analysis
Assists users in selecting primers for amplification of complete CpG islands.…
Recognizes differentially methylated regions between the conditions in CG and…
Identifies differentially methylated regions (DMRs). Defiant is a program that…
Metagenomic sequencing analysis
Compresses coordinate sorted aligned SAM, BAM or CRAM files. Crumble is a…
Incorporates tools and workflows for the analysis of environmental DNA (eDNA)…
Produces maximum-likelihood phylogenetic trees and their associated distance…