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xw sun - cancer genome study
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xw sun

cancer genome study
Zhejiang University • Hangzhou • China

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • BS-seq analysis
  • DNA methylation array analysis
  • Chinese
Programming languages
  • Python




RRBSsim / reduced representation bisulfite sequencing simulator

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Mimics reduced representation bisulfite sequencing (RRBS) data. RRBSsim constructs paired-end bisulfite-sequencing reads that contain significant attributes of real data. It implements sequence…

Fields of interest

RNA-seq analysis
Predicts isoform expression on entirely held-out libraries. APARENT is a…
Assists users in realizing classification on the genomics data. This algorithm…
Corrects long read hybrid errors. HG-CoLoR combines both (i) the idea to…
BS-seq analysis
Filters spurious variants caused by mouse reads in patient-derived xenografts…
Serves as a fully automatic analysis of protein family conservation within a…
Enables genotyping and variant annotation of resequencing data produced by…
DNA methylation array analysis
Enables users to analyze pathways based on the variability of the expression of…
Proceeds quality control, normalizes and performs epigenome-wide association…
Allows users to compare genomic structures and annotations across multiple…