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Zac Shi - Cancer Biomarker Discovery
Open to new opportunities
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Open to new opportunities

Zac Shi

Cancer Biomarker Discovery
University of Notre Dame • Notre Dame • United States of America

Cancer & next-generation sequencing data analysis

Skills and expertise

Fields of interest
  • Immune system analysis
  • WES analysis
  • RNA-seq analysis
Languages
  • English
Programming languages
  • Python
  • R

Fields of interest

Immune system analysis
Extracts glycan determinants from a list of glycan structures. EpitopeXtractor…
Detects perturbed molecular processes in complex human diseases. MultiPLIER…
Provides several applications based on a Bayesian Markov Chain Monte Carlo…
WES analysis
Encodes string sequence into a mathematical representation. Nucl2Vec aims to…
Provides a tool to select the band width according to the read’s error rates.…
Filters spurious variants caused by mouse reads in patient-derived xenografts…
RNA-seq analysis
Compares differential abundance and expression methods on a targeted dataset.…
Generates and filters recombinase polymerase amplification (RPA) primers and…
Allows users to determine logistic regression bio-signatures. PReMS is a…