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Zhaohui Qin - Bioinformatician • Doctorate/PhD
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Zhaohui Qin

Bioinformatician • Doctorate/PhD

Emory University • Atlanta, United States of America

Skills and expertise

Omics and technologies

  • WGS analysis
  • scRNA-seq analysis
  • DNA methylation array analysis

Programming languages

  • C

Languages

  • Chinese

Tools maintained

DIVAN

Desktop

DIVAN / Disease-specific Variant ANnotation

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Detects disease specific, non-coding risk variants. DIVAN provides a learning framework including a feature selection step using a wide library of genomic and epigenomic annotations. This step can…

Omicseq

Web

Omicseq

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Facilitates the easy interrogation of omics datasets holistically to improve ‘findability’ of relevant data. Omicseq uses an algorithm for ranking omics datasets that fully uses the numerical content…
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GPUmotif

Desktop

GPUmotif

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Provides ultra-fast and energy-efficient motif analyses using graphics processing units. GPUmotif proposes a ‘‘fragmentation’’ technique to hide data transfer time between memories. Performance…
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traseR

Desktop

traseR / TRait-Associated SNP EnRichment analysis

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An easy-to-use R Bioconductor package that performs enrichment analyses of trait-associated SNPs in arbitrary genomic intervals with flexible options, including testing method, type of background and…

Methylphet

Desktop

Methylphet

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A computational method and software package to predict TF binding using a combination of methylation profiles and genomic features. The idea is based on the observation that in vivo TF binding events…

scHMM

Desktop

scHMM / sparsely correlated Hidden Markov Models

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Provides a method for performing simultaneous hidden Markov model (HMM) inference for multiple genomic datasets. scHMM is based on an expectation-maximization-type procedure to infer hidden states…
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MotifOrganizer

Desktop

MotifOrganizer

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Helps in clustering motifs identified from mammalian species genome-wide. MotifOrganizer is a two-stage, divide-conquer-combine clustering scheme able to gather motif collections in the hundreds of…