Skills and expertise
Omics and technologies
- WGS analysis
- scRNA-seq analysis
- DNA methylation array analysis
Programming languages
- C
Languages
- Chinese
Tools maintained
DIVAN / Disease-specific Variant ANnotation
Detects disease specific, non-coding risk variants. DIVAN provides a learning framework including a feature selection step using a wide library of genomic and epigenomic annotations. This step can…
Omicseq
Facilitates the easy interrogation of omics datasets holistically to improve ‘findability’ of relevant data. Omicseq uses an algorithm for ranking omics datasets that fully uses the numerical content…
GPUmotif
Provides ultra-fast and energy-efficient motif analyses using graphics processing units. GPUmotif proposes a ‘‘fragmentation’’ technique to hide data transfer time between memories. Performance…
traseR / TRait-Associated SNP EnRichment analysis
An easy-to-use R Bioconductor package that performs enrichment analyses of trait-associated SNPs in arbitrary genomic intervals with flexible options, including testing method, type of background and…
Methylphet
A computational method and software package to predict TF binding using a combination of methylation profiles and genomic features. The idea is based on the observation that in vivo TF binding events…
scHMM / sparsely correlated Hidden Markov Models
Provides a method for performing simultaneous hidden Markov model (HMM) inference for multiple genomic datasets. scHMM is based on an expectation-maximization-type procedure to infer hidden states…
MotifOrganizer
Helps in clustering motifs identified from mammalian species genome-wide. MotifOrganizer is a two-stage, divide-conquer-combine clustering scheme able to gather motif collections in the hundreds of…
