ProfileSeq specifications


Unique identifier OMICS_19147
Name ProfileSeq
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A signal data and two sets of regions, a reference set and a control set.
Output data The corrected counts per bin, the identified regions, and corresponding p-values.
Output format BED
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes




No version available


  • person_outline Eduardo Eyras

Publication for ProfileSeq

ProfileSeq institution(s)
Computational Genomics Group, Universitat Pompeu Fabra, Barcelona, Spain; Laboratorio de Microbiología Aplicada y Biotecnología, Centro Regional Universitario Bariloche, Universidad Nacional del Comahue, INIBIOMA (CONICET-UNComa), Bariloche, Argentina; Catalan Institution for Research and Advanced Studies (ICREA), Barcelona, Spain
ProfileSeq funding source(s)
Supported by an Initial Training Network grant RNPNet (289007) from the European Commission; grants BIO2011-23920 and CSD2009-00080 from Ministerio de Economía y Competitividad (MINECO) from the Spanish Government; and by Fundación Sandra Ibarra de Solidaridad Frente al Cáncer.

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