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Progenetix specifications


Unique identifier OMICS_02591
Name Progenetix
Restrictions to use None
Maintained No


  • Primates
    • Homo sapiens

Publications for Progenetix

Progenetix citations


oncoNcRNA: A Web Portal for Exploring the Non Coding RNAs with Oncogenic Potentials in Human Cancers

Noncoding RNA
PMCID: 5832004
PMID: 29657279
DOI: 10.3390/ncrna3010007

[…] regions which may contain essential oncogenic drivers, were collected from public resources or identified by ourselves. For the TCGA and several other public datasets (excluding the CCLE datasets and Progenetix dataset), their copy number analyses have been performed and recurrent SCNA regions have been identified by GISTIC 2.0 software (Genomic Identification of Significant Targets in Cancer) [], […]


Deletions of multidrug resistance gene loci in breast cancer leads to the down regulation of its expression and predict tumor response to neoadjuvant chemotherapy

PMCID: 4884957
PMID: 26799285
DOI: 10.18632/oncotarget.6953
call_split See protocol

[…] A, AAB, ABB, BBB). The snpQC value ranged from 13 to 25 and negatively correlated with the CNV frequency. Even if the snpQC values were low, the width of the allele peaks was “good” (according to the progenetix resource []) for CNV identification. […]


Human cancer databases (Review)

PMCID: 4254674
PMID: 25369839
DOI: 10.3892/or.2014.3579

[…] enomic, transcriptional, mutational alterations and modules (e.g., GO terms, KEGG pathways) involved in carcinogenesis. IntOGen collects data from various resources such as COSMIC, GEO, ArrayExpress, Progenetix (), TCGA and CGP. Tumor samples in IntOGen are annotated with terms from the International Classification of Diseases for Oncology (ICD-O) () where the tumors are classified based on their […]


The 2014 Nucleic Acids Research Database Issue and an updated NAR online Molecular Biology Database Collection

Nucleic Acids Res
PMCID: 3965027
PMID: 24316579
DOI: 10.1093/nar/gkt1282

[…] riants; and the Database of Genomic Variants (DGV) at the Toronto’s Centre for Applied Genomics (). There are also several more specialized databases (canSAR, DriverDB, FINDBase, HbVar, Lynx, NECTAR, Progenetix) that cover genetic defects leading to various human diseases, including cancer. In addition, three separate databases, Selectome, dbPSHP and 1000 Genomes Selection Browser, report the site […]


Next generation sequencing in cancer research and clinical application

PMCID: 3599179
PMID: 23406336
DOI: 10.1186/1480-9222-15-4

[…] es level 3 and level 4 analyses and enables researchers to easily incorporate TCGA data into their projects. Table  also includes resources useful for cancer research but not built on NGS data, e.g., Progenetix []. […]


Improved Multiplex Ligation Dependent Probe Amplification Analysis Identifies a Deleterious PMS2 Allele Generated by Recombination with Crossover Between PMS2 and PMS2CL

PMCID: 3398144
PMID: 22585707
DOI: 10.1002/gcc.21966
call_split See protocol

[…] ts. Copy numbers were segmented using the Circular Binary Segmentation method (Venkatraman and Olshen, ). Normalized probe and segmentation data were visualized with custom software developed for the Progenetix project (Baudis and Cleary, ). […]


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Progenetix institution(s)
Medizinische Klinik und Poliklinik V der Universität Heidelberg, Germany

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