proGenomes specifications


Unique identifier OMICS_13356
Name proGenomes
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes



  • person_outline Peer Bork

Publication for proGenomes

proGenomes citation


Genetic adaptation of microbial populations present in high intensity catfish production systems with therapeutic oxytetracycline treatment

Sci Rep
PMCID: 5727513
PMID: 29235508
DOI: 10.1038/s41598-017-17640-3

[…] quality was less than 15 in the Phred scale. The filtered reads were subjected to taxonomy classification by Kaiju (version 1.4) with the representative set of bacterial and archaeal genomes from the proGenomes database. The phylogenetic analyses of the microbial composition were conducted by using Phylosift (version 1.0.1). Sample distances and Shannon diversity index were estimated using Metagen […]

proGenomes institution(s)
Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany; Daniel K. Inouye Center for Microbial Oceanography Research and Education, University of Hawai’i at Manoa, Honolulu, HI, USA; Biobyte solutions GmbH, Bothestrasse, Heidelberg, Germany; School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, Australia; Institute of Microbiology, Department of Biology, ETH Zurich, Zurich, Switzerland; Molecular Medicine Partnership Unit, University of Heidelberg and European Molecular Biology Laboratory, Heidelberg, Germany; Max Delbruck Centre for Molecular Medicine, Berlin, Germany; Department of Bioinformatics, Biocenter, University of Wurzburg, Würzburg, Germany
proGenomes funding source(s)
This work was supported by European Commission MetaCardis project [FP7- HEALTH-305312]; International Human Microbiome Standards Consortium [HEALTH-FP7-2010-261376]; European Research Council CancerBiome project [268985]; GALAXY project [Project reference: 668031]; Novo Nordisk Foundation [NNF14CC0001]; European Union Horizon 2020 research and innovation programme [686070]; European Molecular Biology Laboratory (EMBL); Australian Postgraduate Award; EMBL Australia International Ph.D. Fellowship; European Molecular Biology Organization [ALTF 721–2015]; LTFCOFUND2013 [PCOFUND GA-2013-609409].

proGenomes reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review proGenomes