ProGMap specifications

Information


Unique identifier OMICS_05356
Name ProGMap
Alternative name Protein Group Mappings
Restrictions to use None
Maintained No

Publication for Protein Group Mappings

ProGMap citation

library_books

Open source tool for prediction of genome wide protein protein interaction network based on ortholog information

2010
Source Code Biol Med
PMCID: 2924336
PMID: 20684769
DOI: 10.1186/1751-0473-5-8

[…] all-versus-all BLASTP analysis (Washington University, http://blast.wustl.edu), followed by some form of clustering (Jaccard clustering, bidirectional best hit clustering; []). Some tools, including ProGMap [], Berkeley PHOG [], TdrTargets [], BLASTO [], use additional, complementing sequence and structural information to identify orthologs across multiple organisms. Several ortholog databases ha […]

ProGMap institution(s)
Laboratory of Bioinformatics, Wageningen University and Research Centre (WUR), HA Wageningen, Netherlands

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