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PROGmiR specifications

Information


Unique identifier OMICS_12522
Name PROGmiR
Interface Web user interface
Restrictions to use Academic or non-commercial use
Programming languages PHP, R
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Chirayu Pankaj Goswami <>

Publication for PROGmiR

PROGmiR in publications

 (11)
PMCID: 5939831
PMID: 29774136
DOI: 10.4081/oncol.2018.348

[…] in leukemic patients., after determining the expression of mir-9 in different leukemias, we have tried to find the relationship of mirr-9 expression with survival of leukemia patients using progmir database. as shown in , a high expression level of mir-9 significantly reduced survival rate of aml patients [p=0.049, hazard ratio=1.07 (1-1.14)]. this finding might show the prognostic […]

PMCID: 5882315
PMID: 29662624
DOI: 10.18632/oncotarget.24678

[…] (figure )., because ato could suppress mir-182-5p and lead to up-regulation of sesn2, it is interesting to investigate whether these genes would be associated with overall survival of patients. progmir [] and precog [] were two online tools used for assessment of specific microrna and mrna on the survivals of different cancer types, respectively. the datasets were retrieved from geo […]

PMCID: 5736991
PMID: 29326587
DOI: 10.3389/fphar.2017.00902

[…] breast cancer stratified by mir-125a-5p expression levels (low and high) were evaluated using kaplan–meier analysis from a publicly available prognostic mirna online database and web tool (progmir v2) (). the roc analysis was constructed to quantify the accuracy of target genes (hdac2 and birc5) using the sigmaplot spw10.0 software. the area under the curve (auc) is a combined measure […]

PMCID: 5513884
PMID: 28744145
DOI: 10.2147/OTT.S138143

[…] rather than low pathologic stage. no significant correlation was observed between mir-144-3p and other clinicopathologic features. in the survival analyses by prog-mir (http://xvm145.jefferson.edu/progmir/), no significant results were observed (hazard ratio =0.93, 95% ci: 0.83 to 1.04, p=0.204)., in contrast to the adjacent normal liver tissue (2.6200±0.9263), mir-144-3p was significantly […]

PMCID: 5652685
PMID: 29100291
DOI: 10.18632/oncotarget.18648

[…] dataset (overall survival among er+ breast cancer patients) by mirumir (figure ) and the cancer genome atlas (tcga) dataset (metastasis-free survival among invasive breast carcinoma patients) by progmir v2 online tools (figure ). the results showed that the lower expression of mir-494 had a significant poor survival time (figure , p= 0.00113 for gse37405 and p=0.0125 for tcga dataset). […]


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PROGmiR institution(s)
Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA; Departments of Surgery, Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, IN, USA
PROGmiR funding source(s)
This study was partly supported by IUPUI Breast Cancer Signature Center and Susan G. Komen for the Cure grant SAC110025.

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