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ProHits-viz specifications


Unique identifier OMICS_19331
Name ProHits-viz
Software type Toolkit/Suite
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes



  • person_outline Anne-Claude Gingras

Publication for ProHits-viz

ProHits-viz citations


A licensing step links AID to transcription elongation for mutagenesis in B cells

Nat Commun
PMCID: 5871760
PMID: 29593215
DOI: 10.1038/s41467-018-03387-6
call_split See protocol

[…] eys with multiple-testing adjusted P-values (Benjamini–Hochberg procedure) <0.1 were considered as significant. All figures were plotted using ggplot2 package in R. Dot plots were generated using the Prohits-Viz web tool.Where indicated, for pairwise comparisons of treatments or conditions, differences were evaluated by unpaired, two tailed t-test with alpha = 0.05 using Prism (GraphPad). […]


The MYO6 interactome reveals adaptor complexes coordinating early endosome and cytoskeletal dynamics

PMCID: 5891429
PMID: 29467281
DOI: 10.15252/embr.201744884
call_split See protocol

[…] for all analysis in CRAPome (FC‐A, user, default, average; FC‐B, all, stringent, geometric; SAINT‐express, user, average, virtual controls 10, all replicates). Scores were downloaded and exported to ProHits‐Viz to make dot plots or to Cytoscape for network diagrams , .For SILAC experiments, heavy/light ratios were log2 transformed and outliers were identified using the significance A function (Be […]

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ProHits-viz institution(s)
Lunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, ON, Canada; Saw Swee Hock School of Public Health, National University of Singapore and National University Health System, Singapore; Institute of Molecular and Cell Biology, Agency for Science, Technology, and Research, Singapore; Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada; Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada; Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada; Department of Pathology, University of Michigan, Ann Arbor, MI, USA; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA
ProHits-viz funding source(s)
Supported by the Government of Canada through Genome Canada and the Ontario Genomics Institute (grant nos. OGI-088 and OGI-097), the Canadian Institutes of Health Research (Foundation grant no. FDN143301), the US National Institutes of Health (grant no. 5R01GM94231) and the Singapore Ministry of Education (grant no. MOE T2-2-084).

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