ProHits-viz statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

ProHits-viz specifications

Information


Unique identifier OMICS_19331
Name ProHits-viz
Software type Toolkit/Suite
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Anne-Claude Gingras <>

Publication for ProHits-viz

ProHits-viz in publications

 (2)
PMCID: 5871760
PMID: 29593215
DOI: 10.1038/s41467-018-03387-6

[…] with multiple-testing adjusted p-values (benjamini–hochberg procedure) <0.1 were considered as significant. all figures were plotted using ggplot2 package in r. dot plots were generated using the prohits-viz web tool., where indicated, for pairwise comparisons of treatments or conditions, differences were evaluated by unpaired, two tailed t-test with alpha = 0.05 using prism (graphpad)., r […]

PMCID: 5461540
PMID: 28373298
DOI: 10.1074/mcp.M116.065490

[…] and analyzed with saintexpress (). proteins with fdr of ≤1% and at least two unique peptides were considered true positive interactions. visualization of the interactions as dot plots was through prohits-viz.lunenfeld.ca, which was first introduced in (); once a particular prey passes the selected fdr threshold for at least one bait, all the quantitative data across all baits are retrieved […]


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ProHits-viz institution(s)
Lunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, ON, Canada; Saw Swee Hock School of Public Health, National University of Singapore and National University Health System, Singapore; Institute of Molecular and Cell Biology, Agency for Science, Technology, and Research, Singapore; Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada; Princess Margaret Cancer Centre, University Health Network, Toronto, ON, Canada; Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada; Department of Pathology, University of Michigan, Ann Arbor, MI, USA; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA
ProHits-viz funding source(s)
Supported by the Government of Canada through Genome Canada and the Ontario Genomics Institute (grant nos. OGI-088 and OGI-097), the Canadian Institutes of Health Research (Foundation grant no. FDN143301), the US National Institutes of Health (grant no. 5R01GM94231) and the Singapore Ministry of Education (grant no. MOE T2-2-084).

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