ProLuCID pipeline

ProLuCID specifications


Unique identifier OMICS_13626
Name ProLuCID
Software type Package/Module
Interface Command line interface
Restrictions to use License purchase required
Input data Protein FASTA databases or pre-processed databases
Input format FASTA
Output data Peptide identification
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline John R. Yates <>

Publication for ProLuCID

ProLuCID IN pipeline

PMCID: 5042483
PMID: 27684481
DOI: 10.1371/journal.pone.0163500

[…] acquired in the orbitrap analyzer with a resolution of 7,500 at m/z 400., we used two data analysis pipelines; one was proteome discoverer (pd, v.1.3.0. 339, thermo scientific) and the other was prolucid v.1.3.1 for peptide and protein identification [41] in conjunction with census 1.57 for quantitation [42]., in the first pipeline, the raw files were searched against the ipi (international […]

ProLuCID institution(s)
Department of Chemical Physiology, The Scripps Research Institute, La Jolla, CA, USA; Dow AgroSciences LLC, Indianapolis, IN, USA
ProLuCID funding source(s)
The work is supported by NIH Grant 5U01 DE016267-04, 5R01 HL079442-04, R01 MH067880, P41 GM103533 and NHLBI contract # HHSN268201000035C.

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