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Protocols

PromAn specifications

Information


Unique identifier OMICS_12961
Name PromAn
Interface Web user interface
Restrictions to use None
Input data A single genomic sequence
Programming languages Javascript
Computer skills Basic
Stability Stable
Maintained No

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Publication for PromAn

PromAn citations

 (6)
library_books

A randomized, double blind, placebo controlled, proof of concept trial of creatine monohydrate as adjunctive treatment for bipolar depression

2017
PMCID: 5775367
PMID: 29177955
DOI: 10.1007/s00702-017-1817-5

[…] psychiatric reevaluation during the whole period of the trial in case of clinical need.Medical consultations and collection of blood samples were carried out in the Bipolar Disorder Research Program (PROMAN) outpatient clinic at the Instituto de Psiquiatria, Hospital das Clinicas HCFMUSP, Faculdade de Medicina, Universidade de Sao Paulo. Laboratory tests were performed at the Central Laboratory of […]

library_books

Cognitive behavioral rehabilitation vs. treatment as usual for bipolar patients: study protocol for a randomized controlled trial

2017
PMCID: 5371250
PMID: 28351410
DOI: 10.1186/s13063-017-1896-5

[…] ing Scale (MADRS) or the Young Mania Rating Scale (YMRS) at the beginning of the intervention [].Recruiting will take place at an outpatient service provided by the Bipolar Disorder Research Program (PROMAN) at the University of São Paulo Medical School, Brazil. Patients will receive invitations individually and sign an informed consent. This research was approved by an internal ethical committee […]

library_books

Human rights and reproductive health: political realities and pragmatic choices for married adolescent women living in urban slums, Bangladesh

2011
PMCID: 3287459
PMID: 22376023
DOI: 10.1186/1472-698X-11-S3-S3

[…] an increase in confidence and security after the birth of a child. As one adolescent woman explained, 'After the birth of my son my strength increased. Also once you have a child, a son then there is proman (evidence). If anything happens you can get a hold of the man. The woman who cannot have a child has no strength. When my mother-in-law and sister-in-law would treat me really badly, my neighbo […]

call_split

Transcriptional Activation of REST by Sp1 in Huntington's Disease Models

2010
PLoS One
PMCID: 3001865
PMID: 21179468
DOI: 10.1371/journal.pone.0014311
call_split See protocol

[…] ng ClustalW and genomic sequences from GenBank accession numbers AB024498, AB024497 and NM_031788, respectively. Search for conserved transcription factor binding sites was performed by combining the PromAn, TFSearch and MatInspector programs , . […]

library_books

Phylogeny Disambiguates the Evolution of Heat Shock cis Regulatory Elements in Drosophila

2010
PLoS One
PMCID: 2871787
PMID: 20498853
DOI: 10.1371/journal.pone.0010669

[…] e the alignment appeared incorrect, and confirmed that the predicted coding sequence of the adjacent gene was Hsp70 through comparisons to diagnostic sites . Local multiz alignments obtained from the PromAn server were exclusively used for the promoter region of Hsp68 to define the TSS in each species. Second, for several lineage-specific duplications or for the multi-copy gene Hsp70, only a sing […]

library_books

Contrasting Patterns of Transposable Element Insertions in Drosophila Heat Shock Promoters

2009
PLoS One
PMCID: 2793543
PMID: 20041194
DOI: 10.1371/journal.pone.0008486

[…] For each distinct TSS in D. melanogaster, we examined conservation across species using the UCSC genome browser and threaded-blockset alignments produced by Multiz via the PromAn website . As in the UCSC genome alignments, this approach uses a BLASTz search to first identify homologous regions before aligning conserved blocks, and was shown to be more effective than oth […]


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PromAn institution(s)
Laboratoire de Biologie et Génomique Structurales, Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS/INSERM, Illkirch, France; Biozentrum and Swiss Institute of Bioinformatics, Basel, Switzerland; Plateforme de Bioinformatique de Strasbourg, Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS/INSERM, Illkirch, France; Laboratoire de Physiopathologie Cellulaire et Moléculaire de la Rétine, Inserm, Université Pierre et Marie Curie, Paris, France
PromAn funding source(s)
This project was funded by the Institut National de le Santé et de la Recherche Médicale, the Centre National de la Recherche Scientifique, the Université Louis Pasteur de Strasbourg, the Réseau National des Génopoles de Strasbourg and the EVI-GENORET project (number LSHG-CT-2005-512036).

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