PromAn protocols

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PromAn specifications


Unique identifier OMICS_12961
Name PromAn
Interface Web user interface
Restrictions to use None
Input data A single genomic sequence
Programming languages Javascript
Computer skills Basic
Stability Stable
Maintained No


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Publication for PromAn

PromAn in pipeline

PMCID: 2793543
PMID: 20041194
DOI: 10.1371/journal.pone.0008486

[…] found in d. willistoni., for each distinct tss in d. melanogaster, we examined conservation across species using the ucsc genome browser and threaded-blockset alignments produced by multiz via the proman website . as in the ucsc genome alignments, this approach uses a blastz search to first identify homologous regions before aligning conserved blocks, and was shown to be more effective […]

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PromAn in publications

PMCID: 5775367
PMID: 29177955
DOI: 10.1007/s00702-017-1817-5

[…] reevaluation during the whole period of the trial in case of clinical need., medical consultations and collection of blood samples were carried out in the bipolar disorder research program (proman) outpatient clinic at the instituto de psiquiatria, hospital das clinicas hcfmusp, faculdade de medicina, universidade de sao paulo. laboratory tests were performed at the central laboratory […]

PMCID: 3001865
PMID: 21179468
DOI: 10.1371/journal.pone.0014311

[…] clustalw and genomic sequences from genbank accession numbers ab024498, ab024497 and nm_031788, respectively. search for conserved transcription factor binding sites was performed by combining the proman, tfsearch and matinspector programs , ., all data are expressed as mean ± sem, except if stated otherwise. we performed analysis of significance using a one-way anova or two-way anova tests […]

PMCID: 2871787
PMID: 20498853
DOI: 10.1371/journal.pone.0010669

[…] the alignment appeared incorrect, and confirmed that the predicted coding sequence of the adjacent gene was hsp70 through comparisons to diagnostic sites . local multiz alignments obtained from the proman server were exclusively used for the promoter region of hsp68 to define the tss in each species. second, for several lineage-specific duplications or for the multi-copy gene hsp70, […]

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PromAn institution(s)
Laboratoire de Biologie et Génomique Structurales, Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS/INSERM, Illkirch, France; Biozentrum and Swiss Institute of Bioinformatics, Basel, Switzerland; Plateforme de Bioinformatique de Strasbourg, Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS/INSERM, Illkirch, France; Laboratoire de Physiopathologie Cellulaire et Moléculaire de la Rétine, Inserm, Université Pierre et Marie Curie, Paris, France
PromAn funding source(s)
This project was funded by the Institut National de le Santé et de la Recherche Médicale, the Centre National de la Recherche Scientifique, the Université Louis Pasteur de Strasbourg, the Réseau National des Génopoles de Strasbourg and the EVI-GENORET project (number LSHG-CT-2005-512036).

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