ProMate statistics

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Associated diseases

Associated diseases

ProMate specifications


Unique identifier OMICS_08143
Name ProMate
Interface Web user interface
Restrictions to use None
Input data ID, file
Input format PDB
Computer skills Basic
Stability Stable
Maintained No

Publication for ProMate

ProMate in publications

PMCID: 4565107
PMID: 26356630
DOI: 10.1186/1752-0509-9-S5-S3

[…] residues and non-interface residues, through machine learning methods or statistical methods. they analyze different features, such as sequence and structural properties or physical attributes. promate [] creates interface or non-interface sphere around each residue. the histograms of many features are statistically obtained from spheres in training proteins. the probability for each sphere […]

PMCID: 4719070
PMID: 25971595
DOI: 10.1093/bib/bbv027

[…] classifier. therefore, some methods have integrated individual interface predictors into one meta framework [, ]. for instance, meta-ppisp [] combines the prediction scores of pinup, cons-ppisp and promate using linear regression analysis. one review study [] confirmed the superiority of meta-ppisp over its constituent pinup [], cons-ppisp [] and promate [] with accuracies of 50%, 48%, 38% […]

PMCID: 4338852
PMID: 25713596
DOI: 10.1186/s13015-015-0033-9

[…] as in whiscymate [] and combined bindml []., more integrative approaches utilize meta-predictors, which combine multiple predictors into a single output score. meta-ppisp [] combines cons-ppisp [], promate [], and pinup [] via a linear regression model taking local environment into account., by adding sppider [] and ppi-pred [] to that list, metappi [] uses the frequency […]

PMCID: 3983112
PMID: 24722547
DOI: 10.1371/journal.pone.0093709

[…] on amino acid sequence and/or protein structures , which may be used as complementary tools to our simulations. several web servers are available for this purpose (cons-ppisp , pier , consurf , promate , prism , sppider and whiscy ). we selected sppider based on its superior performance in comparison to other servers . in this work, we used sppider i with the tradeoff parameter of 0.3 […]

PMCID: 3912489
PMID: 24492654
DOI: 10.1038/srep03964

[…] function of these genes in detail, we studied tissue-specific expression of uida gene under control of osmate1 and osmate2 promoters in arabidopsis. in this regard, in silico analysis of promoters (promate1, 1540 bp; promate2, 1434 bp) has been carried out, which indicated the presence of various conserved consensus sequences of cis-regulatory elements. promate1 has the 41 unique motifs […]

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ProMate institution(s)
Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel

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