ProMetab specifications

Information


Unique identifier OMICS_03374
Name ProMetab
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for ProMetab

ProMetab in publications

 (9)
PMCID: 4726887
PMID: 26592771
DOI: 10.7508/ibj.2016.02.002

[…] overhauser spectroscopy) pulse sequence to suppress the residual water peak. , data analysis , the resulting nmr spectra were imported into matlab (v.7.8.0.347) software and preprocessed with prometab software (version 1.1). chemical shifts between 0 and 10 ppm were taken and normalized. spectra were binned in 0.004 units, and water peak (4.7 ppm) was removed for data analysis[]. […]

PMCID: 5615787
PMID: 28959541
DOI: 10.1016/j.toxrep.2016.01.008

[…] ; 0.05) to detect treatment variation in nutrient exposed hepatocytes. mean ± se were calculated for three replicates., the processed nmr spectra were imported into matlab (the mathworks, inc.) using prometab v3.3 software . the region from 10 to 0.5 ppm was imported with a resolution of 0.02 ppm which resulted in 4750 data points, and transformed using a generalized log transformation. pca and pl […]

PMCID: 4606108
PMID: 26495154
DOI: 10.1155/2015/175696

[…] pattern recognition technique, allows the identification of differences and similarities between nmr metabolic fingerprints., in particular, nmr spectra were processed by means of a custom-written prometab 3.3 software [] in matlab version r2009b (the math works, natick, ma, usa); spectra were binned from 0.7 to 10.0 ppm with 0.005 ppm bin size; the residual water signal (4.65–4.95 ppm) […]

PMCID: 4388704
PMID: 25849086
DOI: 10.1371/journal.pone.0120429

[…] analysis, collected p-j-resolved nmr spectra were segmented into chemical shift bins between 0.2 and 10.0 ppm corresponding to the bin width of 0.005 ppm (3.0 hz) using customized-developed prometab software (version 3.3) [, ] in matlab (the mathworks, natick, ma). after removal of internal standards (tmsp and tms) and water resonance, the peak areas within each bin were integrated […]

PMCID: 3840700
PMID: 23740368
DOI: 10.1002/art.38021

[…] in group 1 and group 2 were acquired several years apart and so were analyzed separately. samples were processed and data were calibrated with respect to the tmsp signal. spectra were read into prometab (), custom written software in matlab version 7 (the mathworks), and were truncated to the chemical shift range of 0.8–10.0 parts per million. spectra were segmented into 0.005-ppm (2.5 hz) […]


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ProMetab institution(s)
Centre for Systems Biology, The University of Birmingham, Edgbaston, Birmingham, UK

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