ProMeTra statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ProMeTra

Tool usage distribution map

This map represents all the scientific publications referring to ProMeTra per scientific context
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ProMeTra specifications


Unique identifier OMICS_10373
Name ProMeTra
Software type Framework/Library
Interface Graphical user interface
Restrictions to use None
Input data ProMeTra supports simple input formats like CSV files and EXCEL documents.
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes


No version available


  • person_outline Stefan Albaum

Publication for ProMeTra

ProMeTra citations


When Transcriptomics and Metabolomics Work Hand in Hand: A Case Study Characterizing Plant CDF Transcription Factors

PMCID: 5876533
PMID: 29495643
DOI: 10.3390/ht7010007

[…] allows the entry of data on metabolites, genes, and pathways in order to display them in the context of metabolic networks. In addition, there are platform independent online tools available, such as ProMeTra [] and Paintomics [], or MetaMapR []; the latter is an association-based analysis and visualization tool that leverages the KEGG and PubChem databases to also integrate unknowns in given anal […]


From correlation to causation: analysis of metabolomics data using systems biology approaches

PMCID: 5829120
PMID: 29503602
DOI: 10.1007/s11306-018-1335-y

[…] tomics and metabolomics data are generated on the same set of samples. The inputs to the server are gene expression and metabolite quantifications, which are then displayed on KEGG maps.The web-based ProMeTra system (Neuweger et al. ) ( allows users to combine datasets from heterogeneous multiple-omics sources. This tool visualizes and combines datasets from tra […]


From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] onditions. Tools like Integrated Analysis of Cross-Platform Microarray and Pathway Data (InCroMAP) [], Integrated Interactome System (IIS) [], Kazusa Plant Pathway Viewer (KaPPA-View4) [], MapMan [], ProMeTra (which is integrated with MeltDB 2.0) [], Paintomics [], Visualization and Analysis of Networks Containing Experimental Data (VANTED) [], MBROLE [], and Integrated Molecular Pathway Level Ana […]


Urinary proteomics and metabolomics studies to monitor bladder health and urological diseases

BMC Urol
PMCID: 4802825
PMID: 27000794
DOI: 10.1186/s12894-016-0129-7

[…] pathway visualization, various tools are available, including Pathguide (, KEGG-based pathway visualization tool (, Paintomics (, ProMeTra (, KaPPa-View (, MapMan (, MAYDAY, and PaVESy (pavesy.mpimp-golm.mpg […]


Integration of omics: more than the sum of its parts

PMCID: 4761192
PMID: 26900468
DOI: 10.1186/s40170-016-0143-y

[…] can very nicely display multiple datasets simultaneous on the same map, and MetScape [], which builds onto the popular Cytoscape software suite. Inherently platform independent are online tools like Prometra [] and Paintomics [].An example where the systematic and unbiased statistical integration of -omics data sets has been achieved by the correlation of metabolites and genes across a set of bio […]


Intrathecal Ziconotide: Dosing and Administration Strategies in Patients With Refractory Chronic Pain

PMCID: 5067570
PMID: 26856969
DOI: 10.1111/ner.12392

[…] r use with the Medtronic SynchroMed® II Infusion System (Minneapolis, MN, USA) or the CADD‐Micro® Ambulatory Infusion Pump (Smiths Medical; St. Paul, MN, USA) . Ziconotide has also been used with the Prometra® Pump (Flowonix, Mt. Olive, NJ, USA) .The efficacy of IT ziconotide in the treatment of patients with chronic refractory pain of cancer‐related and noncancer‐related etiology was established […]

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ProMeTra institution(s)
Computational Genomics, Center for Biotechnology, Bielefeld University, Bielefeld, Germany

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