PromoSer pipeline

PromoSer specifications

Information


Unique identifier OMICS_09569
Name PromoSer
Interface Web user interface
Restrictions to use None
Input data List of GenBank accessions or FASTA sequences
Output data PromoSer reports the number of accessions for which a promoter could be identified.
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus

Maintainer


  • person_outline Anason S. Halees <>

Publications for PromoSer

PromoSer IN pipelines

 (2)
2005
PMCID: 1173081
PMID: 15904489
DOI: 10.1186/1471-2105-6-121

[…] or to genes including in their sequence record words referring to vision, eye or retina., retrieval of promoter sequences corresponding to 1 kb upstream the predicted tss of genes was done by promoser [14,15]. tss prediction options were set in order to retrieve for each gene 1 kb upstream the most 5' tss, with the same criteria used for retrieval of retinal gene promoters. in addition, […]

2005
PMCID: 1173081
PMID: 15904489
DOI: 10.1186/1471-2105-6-121

[…] prediction options were set in order to retrieve for each gene 1 kb upstream the most 5' tss, with the same criteria used for retrieval of retinal gene promoters. in addition, exclusion options of promoser were set to extract at most one promoter per gene and to avoid retrieval of overlapping sequences. by this way, 17,156 promoters were localized and retrieved., a python script was developed […]

PromoSer institution(s)
Bioinformatics Program, Boston University, Boston, MA, USA; Biomedical Engineering Department, Boston University, Boston, MA, USA

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