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PromoterSweep specifications


Unique identifier OMICS_13963
Name PromoterSweep
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data Nucleotide sequences containing a potential promoter
Input format TXT
Output data A results page with general information about the sequence, best genomic mapping, promoter database search results, graphical overview, tables for combined TFBSs
Output format XML, HTML
Database management system MySQL
Computer skills Basic
Version 1.0
Stability No
Maintained No



This tool is not available anymore.

Publication for PromoterSweep

PromoterSweep citation


Estrogen Receptor Alpha and Nuclear Factor Y Coordinately Regulate the Transcription of the SUMO Conjugating UBC9 Gene in MCF 7 Breast Cancer Cells

PLoS One
PMCID: 3785449
PMID: 24086615
DOI: 10.1371/journal.pone.0075695

[…] the transcription start site refers to the ensemble transcript id enst00000325437. the putative proximal promoter and its putative transcription factor binding sites were predicted using the webtool promotersweep []., a ubc9 promoter-driven luciferase reporter construct was generated by inserting a 2,516 bp fragment containing the 5´-flanking region of the ubc9 gene from nucleotide positions […]

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PromoterSweep institution(s)
Molecular Biophysics, German Cancer Research Center (DKFZ), Heidelberg, Germany; Computer Science and Artificial Intelligence, Informatics Faculty, University of Granada, Granada, Spain; Agricultural Biotechnology Center, Gödöllő, Hungary; Apoptosis and Genomics Research Group of the Hungarian Academy of Sciences, Research Center for Molecular Medicine, Medical and Health Science Center, University of Debrecen, Debrecen, Hungary

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