promoterwise pipeline

promoterwise specifications

Information


Unique identifier OMICS_17613
Name promoterwise
Interface Web user interface
Restrictions to use None
Input data Two DNA sequences.
Input format GCG, FASTA, EMBL, GenBank
Output format PSEUDOBLAST,XML,TAB
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Rodrigo Lopez <>

Additional information


https://www.ebi.ac.uk/Tools/psa/promoterwise/help/

promoterwise IN pipelines

 (2)
2017
PMCID: 5745906
PMID: 29281982
DOI: 10.1186/s12870-017-1208-y

[…] lower cut off score of 12 bit for graphically visualizing the inversions and duplications within the compared pair of sequences. promoter wise 2 package of embl-ebi [http://www.ebi.ac.uk/tools/psa/promoterwise/] was used to predict alignments in reverse and similar orientation among the pairwise sequence comparisons; the putative promoter sequences were aligned using clustalw2 [42] - […]

2005
PMCID: 1273639
PMID: 16086854
DOI: 10.1186/gb-2005-6-8-r72

[…] genes is in [39], all known promoters in cshlmpd can be downloaded from [40]., we thank lisa stubbs for providing experimental testing results before publication. we thank ewan birney for providing promoterwise software, lincoln stein for providing gbrowse. this work is supported by nih grants hg01696, gm60513, ca88351, and hg002600., *number of genes in non-overlapping gene types. ‚Ćnumber […]

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