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Promzea specifications
Information
| Unique identifier | OMICS_08100 |
|---|---|
| Name | Promzea |
| Interface | Web user interface |
| Restrictions to use | None |
| Input format | cDNA FASTA, BED, gene ID, microarray ID |
| Programming languages | Perl |
| Computer skills | Basic |
| Stability | Stable |
| Maintained | No |
Taxon
-
Plants and Fungi
- Arabidopsis thaliana
- Oryza sativa
- Zea mays
Maintainer
Publication for Promzea
Promzea in publications
(2)Characterization of Putative cis Regulatory Elements in Genes Preferentially Expressed in Arabidopsis Male Meiocytes
[…] same score on a random sequence set []. an element is considered to be significantly overrepresented if the p value is less than 0.01. additional analysis for unknown novel motifs was conducted by promzea (http://promzea.org) []. 1000 bp long promoter regions were analyzed and each predicted motif was provided with a mean normalized conditional probability (mncp); a mncp score greater than 1 […]
Transcriptional profiling of Arabidopsis root hairs and pollen defines an apical cell growth signature
[…] two different tools, and compared the results based on sequence consensus alignment and annotation to different plant promoter databases. as expected, different motifs were detected by musa [] and promzea [] as overrepresented in the promoters of apical growth genes (figure ). while we were not able to find correspondence to many of the motifs identified by musa within the publicly available […]
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