Promzea statistics

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Citations per year

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Popular tool citations

chevron_left Gene regulatory network inference De novo motif discovery chevron_right
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Tool usage distribution map

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Associated diseases

Associated diseases

Promzea specifications

Information


Unique identifier OMICS_08100
Name Promzea
Interface Web user interface
Restrictions to use None
Input format cDNA FASTA, BED, gene ID, microarray ID
Programming languages Perl
Computer skills Basic
Stability Stable
Maintained No

Taxon


  • Plants and Fungi
    • Arabidopsis thaliana
    • Oryza sativa
    • Zea mays

Maintainer


This tool is not available anymore.

Publication for Promzea

Promzea in publications

 (2)
PMCID: 4163388
PMID: 25250331
DOI: 10.1155/2014/708364

[…] same score on a random sequence set []. an element is considered to be significantly overrepresented if the p value is less than 0.01. additional analysis for unknown novel motifs was conducted by promzea (http://promzea.org) []. 1000 bp long promoter regions were analyzed and each predicted motif was provided with a mean normalized conditional probability (mncp); a mncp score greater than 1 […]

PMCID: 4236730
PMID: 25080170
DOI: 10.1186/s12870-014-0197-3

[…] two different tools, and compared the results based on sequence consensus alignment and annotation to different plant promoter databases. as expected, different motifs were detected by musa [] and promzea [] as overrepresented in the promoters of apical growth genes (figure ). while we were not able to find correspondence to many of the motifs identified by musa within the publicly available […]


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Promzea institution(s)
Department of Plant Agriculture, University of Guelph, Guelph, ON, Canada

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