proovread specifications

Unique identifier:
OMICS_05092
Software type:
Pipeline/Workflow
Restrictions to use:
Academic or non-commercial use
Biological technology:
Pacific Biosciences
Programming languages:
Perl
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Name:
proovread
Interface:
Command line interface
Output data:
High accuracy pacbio reads, trimmed for uncorrected/low quality regions, complete corrected pacbio reads including un-/ poorly corrected regions, ids of reads and the reason for excluding them from correction, annotations of potential chimeric joints clipped during trimming and the parameter set used for this run.
Operating system:
Unix/Linux
License:
Artistic License version 2.0, GNU General Public License version 3.0
Version:
2.12
Requirements:
NCBI Blast, samtools

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proovread distribution

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proovread support

Documentation

Maintainers

  • Frank Förster <>
  • Thomas Hackl <>

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Publications

Institution(s)

Department for Molecular Plant Physiology and Biophysics, University of Würzburg, Würzburg, Germany; Department of Bioinformatics, University of Würzburg, Biocenter, Am Hubland, Würzburg, Germany

Funding source(s)

Supported by the European Research Council under the European Union’s Seventh Framework Programme (FP/20010-2015)/ERC Grant Agreement number 250194-Carnivorom.

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