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Protocols

ProP specifications

Information


Unique identifier OMICS_02445
Name ProP
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Nikolaj Blom

Publication for ProP

ProP citations

 (56)
library_books

Insect tissue specific vitellogenin facilitates transmission of plant virus

2018
PLoS Pathog
PMCID: 5849359
PMID: 29474489
DOI: 10.1371/journal.ppat.1006909

[…] d us to identify seven RXXR motifs: RSRR ending at amino acid 445, RNNR at 496, RTAR at 719, RFQR at 844, RNNR at 1,043, RSGR at 2,020 and RCVR at 2,043. Based on ProPeptide cleavage site prediction (ProP 1.0 Server) [], an above-threshold cleavage score, 0.873, was obtained for the RSRR motif flanked by conserved polyserine domains (). Cleavage after this motif resulted in two subunits with calcu […]

library_books

Cryptosporidium viatorum from the native Australian swamp rat Rattus lutreolus An emerging zoonotic pathogen?

2018
PMCID: 5853523
PMID: 29556470
DOI: 10.1016/j.ijppaw.2018.01.004

[…] own human C. viatorum subtypes was made using MAFFT in Geneious (). A table of pairwise amino acid similarities amongst C. viatorum subtypes was also constructed using Geneious (). The online servers ProP 1.0 (www.cbs.dtu.dk/services/ProP/) (), NetNGlyc 1.0 (www.cbs.dtu.dk/services/NetNGlyc/) () and NetOGlyc 4.0 (www.cbs.dtu.dk/services/NetOGlyc/) () were used to predict furin cleavage sites, N-gl […]

library_books

Liver myofibroblasts of murine origins express mesothelin: Identification of novel rat mesothelin splice variants*

2017
PLoS One
PMCID: 5595315
PMID: 28898276
DOI: 10.1371/journal.pone.0184499

[…] and SignalP 4.1 Server tools from the ExPASy Bioformatics Resources portal [], EMBOSS Stretcher (Protein Alignment) tool from the EMBL-EBI bioinformatics web and programmatic tools framework [], and Prop 1.0 Server tool from the DTU-CBS Prediction Servers []. The analysis results are listed in . A multiple alignment of cloned rat Mesothelin splice variant nucleotide sequences was performed with w […]

library_books

Glia initiate brain assembly through non canonical Chimaerin/Furin axon guidance in C. elegans

2017
Nat Neurosci
PMCID: 5614858
PMID: 28846083
DOI: 10.1038/nn.4630

[…] tive Furin cleavage sites in FMI-1/Flamingo, MAB-20/Sema and UNC-6 proteins by scanning for RXXR motifs and by using predictions of an artificial neural network trained on known Furin cleavage sites (Prop1.0). Disruption of the motif was achieved by deletion of the Arginine predicted to be recognized for cleavage and was verified by accessing the prop1.0 algorithm score of the deleted motif. In ca […]

library_books

Myticalins: A Novel Multigenic Family of Linear, Cationic Antimicrobial Peptides from Marine Mussels (Mytilus spp.)

2017
Mar Drugs
PMCID: 5577615
PMID: 28829401
DOI: 10.3390/md15080261

[…] a central region satisfying the chemical-physical criteria mentioned above required for the detection of the mature peptide region, a Lys-Arg dibasic propeptide cleavage site clearly identifiable by ProP 1.0 [] and a negatively charged C-terminal region, rich in aspartic and glutamic acid residues, a feature also shared by mussel defensins, mytilins and myticins []. […]

library_books

Cryptosporidium parvum vaccine candidates are incompletely modified with O linked N acetylgalactosamine or contain N terminal N myristate and S palmitate

2017
PLoS One
PMCID: 5549699
PMID: 28792526
DOI: 10.1371/journal.pone.0182395

[…] The furin-like protease site that separates Gp40/Gp15 was predicted by the online tool “ProP 1.0 Server”, made available by the Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark (www.cbs.dtu.dk/services/ProP/) []. Signal peptides and […]


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