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ProPAS specifications

Information


Unique identifier OMICS_32661
Name ProPAS
Alternative name Protein Property Analysis Software
Software type Application/Script
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data One or more protein sequences, one protein/peptide with only amino acid sequence (“Single plain sequence” in the software) and one or more peptide sequences, one peptide for each line (“Peptide list” in the software).
Input format FASTA
Operating system Unix/Linux
Computer skills Advanced
Version 1.1
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainers


  • person_outline Yunping Zhu
  • person_outline Songfeng Wu

Publication for Protein Property Analysis Software

ProPAS citations

 (4)
library_books

Metagenomic analysis reveals that modern microbialites and polar microbial mats have similar taxonomic and functional potential

2015
Front Microbiol
PMCID: 4585152
PMID: 26441900
DOI: 10.3389/fmicb.2015.00966

[…] ively, assembled into contigs, indicating that both environments had complex microbial communities. FragGeneScan was used to predict and translate contig open reading frames (ORFs) (Rho et al., ) and ProPas (Wu and Zhu, ) was used to calculate predicted protein isoelectric points (pI).The assemblies were annotated using Metagenomic Rapid Annotations using Subsystems Technology (MG-RAST) (Meyer et […]

library_books

PHYSICO: An UNIX based Standalone Procedure for Computation of Individual and Group Properties of Protein Sequences

2014
Bioinformation
PMCID: 3937585
PMID: 24616564
DOI: 10.6026/97320630010105

[…] this is that one has to input one sequence at a time for computation of above properties, which is time consuming and limited by the speed of internet. Further, managing outputs may create confusion. Propas [] a standalone software, which can perform calculation on a number of sequences but only of three kinds of physicochemical properties. Thus, available software tools suffer from one or the oth […]

library_books

Comparative genomic analysis of six bacteria belonging to the genus Novosphingobium: insights into marine adaptation, cell cell signaling and bioremediation

2013
BMC Genomics
PMCID: 3704786
PMID: 23809012
DOI: 10.1186/1471-2164-14-431

[…] e protein sequences from each genome served as the queries for the BLAST analysis. Visualization of the gene arrangement was done using Gview []. The calculation of the protein pI was performed using ProPAS []. […]

library_books

Synthesis of Very Long Chain Fatty Acids in the Epidermis Controls Plant Organ Growth by Restricting Cell Proliferation

2013
PLoS Biol
PMCID: 3621670
PMID: 23585732
DOI: 10.1371/journal.pbio.1001531

[…] rib zone (RZ)—a region below the self-renewing stem cell pool that contributes to the meristem pith—and that the vasculature was disorganized ().We monitored the expression pattern of PAS2 using the ProPAS2:β-glucuronidase (GUS) reporter gene (a fusion of the ∼2.0-kb PAS2 promoter and the GUS gene). GUS signal was detected in mature embryos, cotyledons and true leaves of seedlings, the infloresce […]

Citations

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ProPAS institution(s)
State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing, China
ProPAS funding source(s)
Supported by the Chinese National Key Program of Basic Research (Grant No. 2011CB910601,2010CB912700).

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